PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 342aa    MW: 36997.1 Da    PI: 8.3582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-062131526
                -TTTTT-SS-SS CS
     zf-CCCH 15 CkyGdrCkFaHg 26
                C+yGdrCkF H+
  PEQU_04794  2 CQYGDRCKFLHV 13
                ***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.352115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
SCQYGDRCKF LHVSQQQTRP SPFGLGSTKT SQLSQNSQQS TPNPYGFGVQ DTTQLSGANI  60
FGPRNQNPSK PFENKWIRPT AATNSTLSHE ADTQKQASVH ECTDPESCKR QIIEDFKNEA  120
PLWKITCYGH WKYLPCDIVG DSSYEELRAN AYVDAKKGVP LQSIIERERN LLNFKLAEFD  180
ALIRNPYAIR SSGPTAVKQF SVSTNASTVS PMSNVPPTFS SFSQLGTSTS VAPIMSFGGQ  240
ISGIQSNSVF GQSSFPKSTS PIAGGSEMKF GDSGTFGDQL PLQQFGSPPG PNNSSITNGF  300
MAMGSKESPL HSMSSQFFNS SSNQSSGFLD GLKVVQSAFN KA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796916.11e-114PREDICTED: zinc finger CCCH domain-containing protein 46 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94472829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-60C3H family protein